Molecular Diagnosis of Severe Acute Respiratory Syndrome
Identifieur interne : 004759 ( Main/Exploration ); précédent : 004758; suivant : 004760Molecular Diagnosis of Severe Acute Respiratory Syndrome
Auteurs : James B. Mahony [Canada] ; Susan Richardson [Canada]Source :
- The Journal of Molecular Diagnostics : JMD [ 1525-1578 ] ; 2005.
Descripteurs français
- KwdFr :
- ARN viral (analyse), ARN viral (génétique), ARN viral (isolement et purification), Animaux, Humains, Prélèvement biologique, RT-PCR, Syndrome respiratoire aigu sévère (diagnostic), Syndrome respiratoire aigu sévère (virologie), Syndrome respiratoire aigu sévère (épidémiologie), Trousses de réactifs pour diagnostic, Virus du SRAS (génétique), Virus du SRAS (isolement et purification).
- MESH :
- analyse : ARN viral.
- diagnostic : Syndrome respiratoire aigu sévère.
- génétique : ARN viral, Virus du SRAS.
- isolement et purification : ARN viral, Virus du SRAS.
- virologie : Syndrome respiratoire aigu sévère.
- épidémiologie : Syndrome respiratoire aigu sévère.
- Animaux, Humains, Prélèvement biologique, RT-PCR, Trousses de réactifs pour diagnostic.
English descriptors
- KwdEn :
- Animals, Humans, RNA, Viral (analysis), RNA, Viral (genetics), RNA, Viral (isolation & purification), Reagent Kits, Diagnostic, Reverse Transcriptase Polymerase Chain Reaction, SARS Virus (genetics), SARS Virus (isolation & purification), Severe Acute Respiratory Syndrome (diagnosis), Severe Acute Respiratory Syndrome (epidemiology), Severe Acute Respiratory Syndrome (virology), Specimen Handling.
- MESH :
- chemical , analysis : RNA, Viral.
- chemical , genetics : RNA, Viral.
- chemical , isolation & purification : RNA, Viral.
- diagnosis : Severe Acute Respiratory Syndrome.
- epidemiology : Severe Acute Respiratory Syndrome.
- genetics : SARS Virus.
- isolation & purification : SARS Virus.
- virology : Severe Acute Respiratory Syndrome.
- Animals, Humans, Reagent Kits, Diagnostic, Reverse Transcriptase Polymerase Chain Reaction, Specimen Handling.
Abstract
Severe acute respiratory syndrome (SARS) first appeared in Guangdong Province, China, in November 2002. Although virus isolation and serology were useful early in the SARS outbreak for diagnosing new cases, these tests are not generally useful because virus culture requires a BSL-3 laboratory and seroconversion is often delayed until 2 to 3 weeks after infection. The first qualitative reverse transcriptase-polymerase chain reaction tests for SARS-coronavirus (CoV) were sensitive and capable of detecting 1 to 10 genome equivalents. These assays were quickly supplemented with quantitative real-time assays that helped elucidate the natural history of SARS, particularly the initial presence of low viral loads in the upper respiratory tract and high viral loads in the lower respiratory tract. The unique natural history of SARS-CoV infection dictates the testing of both respiratory and nonrespiratory specimens, the testing of multiple specimens from the same patient, and sending out positives to be confirmed by a reference laboratory. Commercially available reverse transcriptase-polymerase chain reaction tests for SARS have recently appeared; however, meaningful evaluations of these assays have not yet been performed and their true performance has not been determined. These and other issues related to diagnosis of SARS-CoV infection are discussed in this review.
Url:
DOI: 10.1016/S1525-1578(10)60587-9
PubMed: 16258152
PubMed Central: 1867551
Affiliations:
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Le document en format XML
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Mahony</name><affiliation wicri:level="1"><nlm:aff id="aff1">Departments of Pathology and Molecular Medicine, St. Joseph's Healthcare, Hamilton, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Departments of Pathology and Molecular Medicine, St. Joseph's Healthcare, Hamilton</wicri:regionArea><wicri:noRegion>Hamilton</wicri:noRegion></affiliation><affiliation wicri:level="4"><nlm:aff id="aff2">McMaster University, and Regional Virology and Chlamydiology Laboratory, St. Joseph's Healthcare, Hamilton, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>McMaster University, and Regional Virology and Chlamydiology Laboratory, St. Joseph's Healthcare, Hamilton</wicri:regionArea><orgName type="university">Université McMaster</orgName><placeName><settlement type="city">Hamilton (Ontario)</settlement><region type="state">Ontario</region></placeName></affiliation></author><author><name sortKey="Richardson, Susan" sort="Richardson, Susan" uniqKey="Richardson S" first="Susan" last="Richardson">Susan Richardson</name><affiliation wicri:level="1"><nlm:aff id="aff3">Hospital for Sick Children, Toronto, Ontario, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Hospital for Sick Children, Toronto, Ontario</wicri:regionArea><wicri:noRegion>Ontario</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4">University of Toronto Network, Toronto, Ontario, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>University of Toronto Network, Toronto, Ontario</wicri:regionArea><wicri:noRegion>Ontario</wicri:noRegion></affiliation></author></analytic><series><title level="j">The Journal of Molecular Diagnostics : JMD</title><idno type="ISSN">1525-1578</idno><idno type="eISSN">1943-7811</idno><imprint><date when="2005">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Humans</term><term>RNA, Viral (analysis)</term><term>RNA, Viral (genetics)</term><term>RNA, Viral (isolation & purification)</term><term>Reagent Kits, Diagnostic</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>SARS Virus (genetics)</term><term>SARS Virus (isolation & purification)</term><term>Severe Acute Respiratory Syndrome (diagnosis)</term><term>Severe Acute Respiratory Syndrome (epidemiology)</term><term>Severe Acute Respiratory Syndrome (virology)</term><term>Specimen Handling</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (analyse)</term><term>ARN viral (génétique)</term><term>ARN viral (isolement et purification)</term><term>Animaux</term><term>Humains</term><term>Prélèvement biologique</term><term>RT-PCR</term><term>Syndrome respiratoire aigu sévère (diagnostic)</term><term>Syndrome respiratoire aigu sévère (virologie)</term><term>Syndrome respiratoire aigu sévère (épidémiologie)</term><term>Trousses de réactifs pour diagnostic</term><term>Virus du SRAS (génétique)</term><term>Virus du SRAS (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ARN viral</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ARN viral</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Severe Acute Respiratory Syndrome</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Syndrome respiratoire aigu sévère</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Humans</term><term>Reagent Kits, Diagnostic</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Specimen Handling</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Humains</term><term>Prélèvement biologique</term><term>RT-PCR</term><term>Trousses de réactifs pour diagnostic</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Severe acute respiratory syndrome (SARS) first appeared in Guangdong Province, China, in November 2002. Although virus isolation and serology were useful early in the SARS outbreak for diagnosing new cases, these tests are not generally useful because virus culture requires a BSL-3 laboratory and seroconversion is often delayed until 2 to 3 weeks after infection. The first qualitative reverse transcriptase-polymerase chain reaction tests for SARS-coronavirus (CoV) were sensitive and capable of detecting 1 to 10 genome equivalents. These assays were quickly supplemented with quantitative real-time assays that helped elucidate the natural history of SARS, particularly the initial presence of low viral loads in the upper respiratory tract and high viral loads in the lower respiratory tract. The unique natural history of SARS-CoV infection dictates the testing of both respiratory and nonrespiratory specimens, the testing of multiple specimens from the same patient, and sending out positives to be confirmed by a reference laboratory. Commercially available reverse transcriptase-polymerase chain reaction tests for SARS have recently appeared; however, meaningful evaluations of these assays have not yet been performed and their true performance has not been determined. These and other issues related to diagnosis of SARS-CoV infection are discussed in this review.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Vallet, S" uniqKey="Vallet S">S Vallet</name></author><author><name sortKey="Gagneur, A" uniqKey="Gagneur A">A Gagneur</name></author><author><name sortKey="Talbot, Pj" uniqKey="Talbot P">PJ Talbot</name></author><author><name sortKey="Legrand, M" uniqKey="Legrand M">M Legrand</name></author><author><name sortKey="Sizun, J" uniqKey="Sizun J">J Sizun</name></author><author><name sortKey="Picard, B" uniqKey="Picard B">B Picard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lai, Mm" uniqKey="Lai M">MM Lai</name></author><author><name sortKey="Cavanagh, D" uniqKey="Cavanagh D">D Cavanagh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Peiris, Js" uniqKey="Peiris J">JS Peiris</name></author><author><name sortKey="Lai, St" 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Pks" uniqKey="Chan P">PKS Chan</name></author><author><name sortKey="To, W K" uniqKey="To W">W-K To</name></author><author><name sortKey="Ng, K C" uniqKey="Ng K">K-C Ng</name></author><author><name sortKey="Lam, Rky" uniqKey="Lam R">RKY Lam</name></author><author><name sortKey="Ng, T K" uniqKey="Ng T">T-K Ng</name></author><author><name sortKey="Chan, Rcw" uniqKey="Chan R">RCW Chan</name></author><author><name sortKey="Wu, A" uniqKey="Wu A">A Wu</name></author><author><name sortKey="Yu, W C" uniqKey="Yu W">W-C Yu</name></author><author><name sortKey="Lee, N" uniqKey="Lee N">N Lee</name></author><author><name sortKey="Hui, Dsc" uniqKey="Hui D">DSC Hui</name></author><author><name sortKey="Lai, S T" uniqKey="Lai S">S-T Lai</name></author><author><name sortKey="Hon, Ekl" uniqKey="Hon E">EKL Hon</name></author><author><name sortKey="Li, C K" uniqKey="Li C">C-K Li</name></author><author><name sortKey="Sung, Jjy" uniqKey="Sung J">JJY Sung</name></author><author><name sortKey="Tam, Js" uniqKey="Tam J">JS Tam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lim, Pl" uniqKey="Lim P">PL Lim</name></author><author><name sortKey="Kurup, A" uniqKey="Kurup A">A Kurup</name></author><author><name sortKey="Gopalakrishna, G" uniqKey="Gopalakrishna G">G Gopalakrishna</name></author><author><name sortKey="Chan, Kp" uniqKey="Chan K">KP Chan</name></author><author><name sortKey="Wong, Cw" uniqKey="Wong C">CW Wong</name></author><author><name sortKey="Ng, Lc" uniqKey="Ng L">LC Ng</name></author><author><name sortKey="Se Thoe, Sy" uniqKey="Se Thoe S">SY Se-Thoe</name></author><author><name sortKey="Oon, L" uniqKey="Oon L">L Oon</name></author><author><name sortKey="Bai, X" uniqKey="Bai X">X Bai</name></author><author><name sortKey="Stanton, Lw" uniqKey="Stanton L">LW Stanton</name></author><author><name sortKey="Ruan, Y" uniqKey="Ruan Y">Y Ruan</name></author><author><name sortKey="Miller, Ld" uniqKey="Miller L">LD Miller</name></author><author><name sortKey="Vega, Vb" uniqKey="Vega V">VB Vega</name></author><author><name sortKey="James, L" uniqKey="James L">L James</name></author><author><name sortKey="Ooi, Pl" uniqKey="Ooi P">PL Ooi</name></author><author><name sortKey="Kai, Cs" uniqKey="Kai C">CS Kai</name></author><author><name sortKey="Olsen, Sj" uniqKey="Olsen S">SJ Olsen</name></author><author><name sortKey="Ang, B" uniqKey="Ang B">B Ang</name></author><author><name sortKey="Leo, Ys" uniqKey="Leo Y">YS Leo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Orellano, C" uniqKey="Orellano C">C Orellano</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Canada</li></country><region><li>Ontario</li></region><settlement><li>Hamilton (Ontario)</li></settlement><orgName><li>Université McMaster</li></orgName></list><tree><country name="Canada"><noRegion><name sortKey="Mahony, James B" sort="Mahony, James B" uniqKey="Mahony J" first="James B." last="Mahony">James B. Mahony</name></noRegion><name sortKey="Mahony, James B" sort="Mahony, James B" uniqKey="Mahony J" first="James B." last="Mahony">James B. Mahony</name><name sortKey="Richardson, Susan" sort="Richardson, Susan" uniqKey="Richardson S" first="Susan" last="Richardson">Susan Richardson</name><name sortKey="Richardson, Susan" sort="Richardson, Susan" uniqKey="Richardson S" first="Susan" last="Richardson">Susan Richardson</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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